CBI Toolbox
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Documentation

  • CBI Toolbox
  • Installation
    • Using pip
    • Optional dependencies
    • Using conda
    • CUDA support
  • About
    • Citing CBI Toolbox
    • Acknowledgements
    • License
    • Other Projects
  • Experiments
    • OVC_2021
    • PAAQ_2023
    • OMMT_2023

API Reference

  • cbi_toolbox
    • cbi_toolbox.bsplines
      • bspline()
    • cbi_toolbox.parallel
      • cbi_toolbox.parallel.mpi
        • compute_vector_extent()
        • create_slice_view()
        • create_vector_type()
        • distribute_mpi()
        • distribute_mpi_all()
        • gather_full_shape()
        • get_rank()
        • get_size()
        • is_root_process()
        • load()
        • redistribute()
        • save()
        • to_mpi_datatype()
        • wait_all()
      • distribute_bin()
      • distribute_bin_all()
      • parallelize()
    • cbi_toolbox.reconstruct
      • cbi_toolbox.reconstruct.fpsopt
        • deconvolve_sinogram()
        • inverse_psf_rfft()
      • cbi_toolbox.reconstruct.preprocess
        • erase_corners()
        • remove_background_illumination()
        • transmission_to_absorption()
      • cbi_toolbox.reconstruct.vhf
        • argsort_tsp()
        • average_frequency()
        • estimate_di()
        • l_curve()
        • orient_phases()
        • phase_correction()
        • phase_diff()
        • phase_error()
        • sample_video()
        • unfold_phases()
        • vhf_phase_naive()
        • vhf_phase_uncorrected()
      • mse()
      • mutual_information()
      • normalize()
      • psnr()
      • scale_to_mse()
    • cbi_toolbox.simu
      • cbi_toolbox.simu.dynamic
        • sample_phases()
        • sigsin()
        • sigsin_beat()
      • cbi_toolbox.simu.imaging
        • fps_opt()
        • fss_opt()
        • noise()
        • opt()
        • quantize()
        • spim()
        • widefield()
      • cbi_toolbox.simu.optics
        • create_wf_1d()
        • gaussian_psf()
        • openspim_illumination()
        • resample_wavefront()
        • wf_mix()
        • wf_to_2d()
      • cbi_toolbox.simu.primitives
        • ball()
        • boccia()
        • fiber()
        • forward_ellipse()
        • phantom()
        • quadrant_symmetry()
        • quadrant_to_volume()
        • torus_boccia()
      • cbi_toolbox.simu.textures
        • forward_simplex()
        • simplex()
        • spheres()
    • cbi_toolbox.splineradon
      • iradon()
      • iradon_inner()
      • iradon_post()
      • iradon_pre()
      • is_cuda_available()
      • radon()
      • radon_inner()
      • radon_post()
      • radon_pre()
    • cbi_toolbox.utils
      • cbi_toolbox.utils.ome
        • load_ome_tiff()
        • save_ome_tiff()
      • cbi_toolbox.utils.plotting
        • AnimImshow
          • AnimImshow.save_to_gif()
        • trace_points()
      • fft_size()
CBI Toolbox
  • cbi_toolbox
  • cbi_toolbox.simu
  • Edit on GitHub

cbi_toolbox.simu

Submodules

  • cbi_toolbox.simu.dynamic
    • sample_phases()
    • sigsin()
    • sigsin_beat()
  • cbi_toolbox.simu.imaging
    • fps_opt()
    • fss_opt()
    • noise()
    • opt()
    • quantize()
    • spim()
    • widefield()
  • cbi_toolbox.simu.optics
    • create_wf_1d()
    • gaussian_psf()
    • openspim_illumination()
    • resample_wavefront()
    • wf_mix()
    • wf_to_2d()
  • cbi_toolbox.simu.primitives
    • ball()
    • boccia()
    • fiber()
    • forward_ellipse()
    • phantom()
    • quadrant_symmetry()
    • quadrant_to_volume()
    • torus_boccia()
  • cbi_toolbox.simu.textures
    • forward_simplex()
    • simplex()
    • spheres()

Module contents

The simu package provides objects and functions used to simulate imaging processes.

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© Copyright 2020, François Marelli. Revision fbf50534.

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